Biodiversity and Conservation — Publications
Selected Journal Publications
Amrita Gupta, Bistra Dilkina, Dana J. Morin, Angela K. Fuller, J. Andrew Royle, Christopher Sutherland, Carla P. Gomes. Reserve design to optimize functional connectivity and animal density. Conservation Biology (2019). [pdf]
Bistra Dilkina, Rachel Houtman, Carla P. Gomes, Claire A. Montgomery, Kevin S. McKelvey, Katherine Kendall, Tabitha A. Graves, Richard Bernstein, Michael K. Schwartz. Trade-offs and efficiencies in optimal budget-constrained multispecies corridor networks. Conservation Biology (2016). [pdf]
Daniel Fink, Theodoros Damoulas, Nicholas E. Bruns, Frank A. La Sorte, Wesley M. Hochachka, Carla P. Gomes, Steve Kelling. Crowdsourcing Meets Ecology: Hemisphere-Wide Spatiotemporal Species Distribution Models. AI Mag. 35(2): 19-30 (2014) [pdf]
Brian L. Sullivan, Jocelyn L. Aycrigg, Jessie H. Barry, Rick E. Bonney, Nicholas Bruns, Caren B. Cooper, Theo Damoulas, André A. Dhondt, Tom Dietterich, Andrew Farnsworth, Daniel Fink, John W. Fitzpatrick, Thomas Fredericks, Jeff Gerbracht, Carla Gomes, Wesley M. Hochachka, Marshall J. Iliff, Carl Lagoze, Frank A. La Sorte, Matthew Merrifield, Will Morris, Tina B. Phillips, Mark Reynolds, Amanda D. Rodewald, Kenneth V. Rosenberg, Nancy M. Trautmann, Andrea Wiggins, David W. Winkler, Weng-Keen Wong, Christopher L. Wood, Jun Yu, Steve Kelling. The eBird enterprise: An integrated approach to development and application of citizen science. Biological Conservation (2014). [pdf]
Editors' Choice
Steve Kelling, Jeff Gerbracht, Daniel Fink, Carl Lagoze, Weng-Keen Wong, Jun Yu, Theodoros Damoulas, Carla P. Gomes. A Human/Computer Learning Network to Improve Biodiversity Conservation and Research. AI Mag. 34(1): 10-20 (2013) [pdf]
Cover article and innovative AI award at IAAI 2012
Publications By Year
This publication list is mostly from my DBLP profile. Email me if you'd like a copy of one of my publications not included here.
2023
- Jinzhao Li, Daniel Fink, Christopher Wood, Carla P. Gomes, Yexiang Xue. Provable Optimization of Quantal Response Leader-Follower Games with Exponentially Large Action Spaces. AAMAS 2023: 756-765 [pdf]
- Courtney L. Davis, Yiwei Bai, Di Chen, Orin Robinson, Viviana Ruiz-Gutierrez, Carla P. Gomes, Daniel Fink. Deep learning with citizen science data enables estimation of species diversity and composition at continental extents. Ecology (2023). [pdf]
- Olivia J. Graham, Tiffany Stephens, Brendan Rappazzo, Corinne Klohmann, Sukanya Dayal, Emily M. Adamczyk, Angeleen Olson, Margot Hessing-Lewis, Morgan Eisenlord, Bo Yang, Colleen Burge, Carla P. Gomes, Drew Harvell. Deeper habitats and cooler temperatures moderate a climate-driven seagrass disease. Philosophical Transactions of the Royal Society B: Biological Sciences (2023). [pdf]
2022
- Lillian R. Aoki, Brendan Rappazzo, Deanna S. Beatty, Lia K. Domke, Ginny L. Eckert, Morgan E. Eisenlord, Olivia J. Graham, Leah Harper, Timothy L. Hawthorne, Margot Hessing-Lewis, Kevin A. Hovel, Zachary L. Monteith, Ryan S. Mueller, Angeleen M. Olson, Carolyn Prentice, John J. Stachowicz, Fiona Tomas, Bo Yang, J. Emmett Duffy, Carla Gomes, C. Drew Harvell. Disease surveillance by artificial intelligence links eelgrass wasting disease to ocean warming across latitudes. Limnology and Oceanography (2022). [pdf]
2021
- Johan Bjorck, Qinru Shi, Carrie Brown-Lima, Jennifer Dean, Angela Fuller, Carla P. Gomes. Learning Augmented Methods for Matching: Improving Invasive Species Management and Urban Mobility. AAAI 2021: 14702-14710 [pdf]
- Johan Bjorck, Brendan H. Rappazzo, Qinru Shi, Carrie Brown-Lima, Jennifer Dean, Angela Fuller, Carla P. Gomes. Accelerating Ecological Sciences from Above: Spatial Contrastive Learning for Remote Sensing. AAAI 2021: 14711-14720 [pdf]
- Wenting Zhao, Shufeng Kong, Junwen Bai, Daniel Fink, Carla P. Gomes. HOT-VAE: Learning High-Order Label Correlation for Multi-Label Classification via Attention-Based Variational Autoencoders. AAAI 2021: 15016-15024 [pdf]
- Brendan H. Rappazzo, Morgan E. Eisenlord, Olivia J. Graham, Lillian R. Aoki, Phoebe D. Dawkins, Drew Harvell, Carla P. Gomes. EeLISA: Combating Global Warming Through the Rapid Analysis of Eelgrass Wasting Disease. AAAI 2021: 15156-15165 [pdf]
- Wenting Zhao, Shufeng Kong, Junwen Bai, Daniel Fink, Carla P. Gomes. HOT-VAE: Learning High-Order Label Correlation for Multi-Label Classification via Attention-Based Variational Autoencoders. CoRR abs/2103.06375 (2021) [pdf]
- Maya L. Groner, Morgan E. Eisenlord, Reyn M. Yoshioka, Evan A. Fiorenza, Phoebe D. Dawkins, Olivia J. Graham, Miranda Winningham, Alex Vompe, Natalie D. Rivlin, Bo Yang, Colleen A. Burge, Brendan Rappazzo, Carla P. Gomes, C. Drew Harvell. Warming sea surface temperatures fuel summer epidemics of eelgrass wasting disease. Marine Ecology Progress Series (MEPS) (2021). [pdf]
- Olivia J. Graham, Lillian R. Aoki, Tiffany Stephens, Joshua Stokes, Sukanya Dayal, Brendan Rappazzo, Carla P. Gomes, C. Drew Harvell. Effects of Seagrass Wasting Disease on Eelgrass Growth and Belowground Sugar in Natural Meadows. Frontiers in Marine Science (2021). [pdf]
2020
- Junwen Bai, Shufeng Kong, Carla P. Gomes. Disentangled Variational Autoencoder based Multi-Label Classification with Covariance-Aware Multivariate Probit Model. IJCAI 2020: 4313-4321 [pdf]
- Shufeng Kong, Junwen Bai, Jae Hee Lee, Di Chen, Andrew Allyn, Michelle Stuart, Malin Pinsky, Katherine Mills, Carla P. Gomes. Deep Hurdle Networks for Zero-Inflated Multi-Target Regression: Application to Multiple Species Abundance Estimation. IJCAI 2020: 4375-4381 [pdf]
- Junwen Bai, Shufeng Kong, Carla P. Gomes. Disentangled Variational Autoencoder based Multi-Label Classification with Covariance-Aware Multivariate Probit Model. CoRR abs/2007.06126 (2020) [pdf]
- Shufeng Kong, Junwen Bai, Jae Hee Lee, Di Chen, Andrew Allyn, Michelle Stuart, Malin Pinsky, Katherine Mills, Carla P. Gomes. Deep Hurdle Networks for Zero-Inflated Multi-Target Regression: Application to Multiple Species Abundance Estimation. CoRR abs/2010.16040 (2020) [pdf]
- Nathan Jensen, Elizabeth Lyons, Eddy Chebelyon, Ronan Le Bras, Carla Gomes. Conspicuous monitoring and remote work. Journal of Economic Behavior & Organization (2020). [pdf]
2019
- Johan Bjorck, Brendan H. Rappazzo, Di Chen, Richard Bernstein, Peter H. Wrege, Carla P. Gomes. Automatic Detection and Compression for Passive Acoustic Monitoring of the African Forest Elephant. AAAI 2019: 476-484 [pdf]
- Di Chen, Carla P. Gomes. Bias Reduction via End-to-End Shift Learning: Application to Citizen Science. AAAI 2019: 493-500 [pdf]
- Anmol Kabra, Yexiang Xue, Carla P. Gomes. CPU-accelerated principal-agent game for scalable citizen science. COMPASS 2019: 165-173 [pdf]
- Johan Bjorck, Brendan Rappazzo, Di Chen, Richard Bernstein, Peter H. Wrege, Carla P. Gomes. Automatic Detection and Compression for Passive Acoustic Monitoring of the African Forest Elephant. CoRR abs/1902.09069 (2019) [pdf]
- Amrita Gupta, Bistra Dilkina, Dana J. Morin, Angela K. Fuller, J. Andrew Royle, Christopher Sutherland, Carla P. Gomes. Reserve design to optimize functional connectivity and animal density. Conservation Biology (2019). [pdf]
- Yexiang Xue, Carla P. Gomes. Engaging Citizen Scientists in Data Collection for Conservation. Artificial Intelligence and Conservation (2019). [pdf]
2018
- Johan Bjorck, Yiwei Bai, Xiaojian Wu, Yexiang Xue, Mark C. Whitmore, Carla P. Gomes. Scalable Relaxations of Sparse Packing Constraints: Optimal Biocontrol in Predator-Prey Networks. AAAI 2018: 748-756 [pdf]
- Luming Tang, Yexiang Xue, Di Chen, Carla P. Gomes. Multi-Entity Dependence Learning With Rich Context via Conditional Variational Auto-Encoder. AAAI 2018: 824-832 [pdf]
- Di Chen, Yexiang Xue, Carla P. Gomes. End-to-End Learning for the Deep Multivariate Probit Model. ICML 2018: 931-940 [pdf]
- Di Chen, Yexiang Xue, Carla P. Gomes. End-to-End Learning for the Deep Multivariate Probit Model. CoRR abs/1803.08591 (2018) [pdf]
- Di Chen, Carla P. Gomes. Bias Reduction via End-to-End Shift Learning: Application to Citizen Science. CoRR abs/1811.00458 (2018) [pdf]
2017
- Yexiang Xue, XiaoJian Wu, Dana Morin, Bistra Dilkina, Angela Fuller, J. Andrew Royle, Carla P. Gomes. Dynamic Optimization of Landscape Connectivity Embedding Spatial-Capture-Recapture Information. AAAI 2017: 4552-4558 [pdf]
- Di Chen, Yexiang Xue, Daniel Fink, Shuo Chen, Carla P. Gomes. Deep Multi-species Embedding. IJCAI 2017: 3639-3646 [pdf]
- Luming Tang, Yexiang Xue, Di Chen, Carla P. Gomes. Multi-Entity Dependence Learning with Rich Context via Conditional Variational Auto-encoder. CoRR abs/1709.05612 (2017) [pdf]
- Johan Bjorck, Yiwei Bai, Xiaojian Wu, Yexiang Xue, Mark C. Whitmore, Carla P. Gomes. Scalable Relaxations of Sparse Packing Constraints: Optimal Biocontrol in Predator-Prey Network. CoRR abs/1711.06800 (2017) [pdf]
2016
- Yexiang Xue, Ian Davies, Daniel Fink, Christopher Wood, Carla P. Gomes. Avicaching: A Two Stage Game for Bias Reduction in Citizen Science. AAMAS 2016: 776-785 [pdf]
- Yexiang Xue, Ian Davies, Daniel Fink, Christopher Wood, Carla P. Gomes. Behavior Identification in Two-Stage Games for Incentivizing Citizen Science Exploration. CP 2016: 701-717 [pdf]
- Di Chen, Yexiang Xue, Shuo Chen, Daniel Fink, Carla P. Gomes. Deep Multi-Species Embedding. CoRR abs/1609.09353 (2016) [pdf]
- Bistra Dilkina, Rachel Houtman, Carla P. Gomes, Claire A. Montgomery, Kevin S. McKelvey, Katherine Kendall, Tabitha A. Graves, Richard Bernstein, Michael K. Schwartz. Trade-offs and efficiencies in optimal budget-constrained multispecies corridor networks. Conservation Biology (2016). [pdf]
2015
- Stefano Ermon, Yexiang Xue, Russell Toth, Bistra Dilkina, Richard Bernstein, Theodoros Damoulas, Patrick E. Clark, Steve DeGloria, Andrew Mude, Christopher Barrett, Carla P. Gomes. Learning Large-Scale Dynamic Discrete Choice Models of Spatio-Temporal Preferences with Application to Migratory Pastoralism in East Africa. AAAI 2015: 644-650 [pdf]
2014
- Daniel Fink, Theodoros Damoulas, Nicholas E. Bruns, Frank A. La Sorte, Wesley M. Hochachka, Carla P. Gomes, Steve Kelling. Crowdsourcing Meets Ecology: Hemisphere-Wide Spatiotemporal Species Distribution Models. AI Mag. 35(2): 19-30 (2014) [pdf]
- Theodoros Damoulas, Jin He, Richard Bernstein, Carla P. Gomes, Anish Arora. String Kernels for Complex Time-Series: Counting Targets from Sensed Movement. ICPR 2014: 4429-4434 [pdf]
- Brian L. Sullivan, Jocelyn L. Aycrigg, Jessie H. Barry, Rick E. Bonney, Nicholas Bruns, Caren B. Cooper, Theo Damoulas, André A. Dhondt, Tom Dietterich, Andrew Farnsworth, Daniel Fink, John W. Fitzpatrick, Thomas Fredericks, Jeff Gerbracht, Carla Gomes, Wesley M. Hochachka, Marshall J. Iliff, Carl Lagoze, Frank A. La Sorte, Matthew Merrifield, Will Morris, Tina B. Phillips, Mark Reynolds, Amanda D. Rodewald, Kenneth V. Rosenberg, Nancy M. Trautmann, Andrea Wiggins, David W. Winkler, Weng-Keen Wong, Christopher L. Wood, Jun Yu, Steve Kelling. The eBird enterprise: An integrated approach to development and application of citizen science. Biological Conservation (2014). [pdf]
2013
- Steve Kelling, Jeff Gerbracht, Daniel Fink, Carl Lagoze, Weng-Keen Wong, Jun Yu, Theodoros Damoulas, Carla P. Gomes. A Human/Computer Learning Network to Improve Biodiversity Conservation and Research. AI Mag. 34(1): 10-20 (2013) [pdf]
- Ronan LeBras, Bistra Dilkina, Yexiang Xue, Carla P. Gomes, Kevin S. McKelvey, Michael K. Schwartz, Claire A. Montgomery. Robust Network Design For Multispecies Conservation. AAAI 2013: 1305-1312 [pdf]
- Bistra Dilkina, Katherine J. Lai, Ronan LeBras, Yexiang Xue, Carla P. Gomes, Ashish Sabharwal, Jordan Suter, Kevin S. McKelvey, Michael K. Schwartz, Claire A. Montgomery. Large Landscape Conservation - Synthetic and Real-World Datasets. AAAI 2013: 1369-1372 [pdf]
- Yexiang Xue, Bistra Dilkina, Theodoros Damoulas, Daniel Fink, Carla P. Gomes, Steve Kelling. Improving Your Chances: Boosting Citizen Science Discovery. HCOMP 2013: 198-206 [pdf]
2012
- Steve Kelling, Jeff Gerbracht, Daniel Fink, Carl Lagoze, Weng-Keen Wong, Jun Yu, Theodoros Damoulas, Carla P. Gomes. eBird: A Human/Computer Learning Network for Biodiversity Conservation and Research. IAAI 2012: 2229-2236 [pdf]
- Jon M. Conrad, Carla P. Gomes, Willem-Jan van Hoeve, Ashish Sabharwal, Jordan F. Suter. Wildlife corridors as a connected subgraph problem. Journal of Environmental Economics and Management (2012). [pdf]
2011
- Katherine J. Lai, Carla P. Gomes, Michael K. Schwartz, Kevin S. McKelvey, David E. Calkin, Claire A. Montgomery. The Steiner Multigraph Problem: Wildlife Corridor Design for Multiple Species. AAAI 2011: 1357-1364 [pdf]
- Bistra Dilkina, Katherine J. Lai, Carla P. Gomes. Upgrading Shortest Paths in Networks. CPAIOR 2011: 76-91 [pdf]
2010
- Kiyan Ahmadizadeh, Bistra Dilkina, Carla P. Gomes, Ashish Sabharwal. An Empirical Study of Optimization for Maximizing Diffusion in Networks. CP 2010: 514-521 [pdf]
- Bistra Dilkina, Carla P. Gomes. Solving Connected Subgraph Problems in Wildlife Conservation. CPAIOR 2010: 102-116 [pdf]
- Theodoros Damoulas, Samuel Henry, Andrew Farnsworth, Michael Lanzone, Carla P. Gomes. Bayesian Classification of Flight Calls with a Novel Dynamic Time Warping Kernel. ICMLA 2010: 424-429 [pdf]
- Daniel Sheldon, Bistra Dilkina, Adam N. Elmachtoub, Ryan Finseth, Ashish Sabharwal, Jon Conrad, Carla P. Gomes, David B. Shmoys, William Allen, Ole Amundsen, William Vaughan. Maximizing the Spread of Cascades Using Network Design. UAI 2010: 517-526 [pdf]
Contact Information
Dept. Computer Science
353 Gates Hall
Cornell University
Ithaca, NY 14853 USA
Faculty of Computing and Information Science
Dept. Information Science
Dyson School of Applied Economics and Management
607-255-9189 (voice); 607-255-4428 (fax)
gomes at cs.cornell.edu
http://www.cs.cornell.edu/gomes