| Version | Release date | Source databases | Number of Proteins | Number of Clusters (level 1e-0) | Number of Singletons |
|---|---|---|---|---|---|
| 3.0 | May 2000 | SwissProt 38 + TrEMBL 9 | 365174 (341645 after merging identical entries) | 18140 | 43219 (of which 14384 are satellites of other clusters) |
| 2.0 | July 1998 | SwissProt 35 + updates | 72623 | 5869 | 7485 |
| 1.2 | January 1998 | SwissProt 33 | 52205 | 4435 | 6167 |
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